CRP - UniProtKB: Q7M7I9 regulon and binding site collection of Vibrio vulnificus CMCP6


Sites are listed as curated.

AGTGCGCCAAATCACAGA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

AGTGCGCCAAATCACAGA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

Site sequence Experimental techniques Gene regulation Curations PMIDs
AGTGCGCCAAATCACAGA Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) VV1_0842 , VV1_0841 , VV1_0840 , VV1_0839 , VV1_0838 , VV1_0837 , VV1_0836 , VV1_0843 , VV1_0844 , VV1_0845 , VV1_0846 , VV1_0847 , VV1_0848
... ... VV1_0842 VV1_0841 VV1_0840 VV1_0839 VV1_0838 VV1_0837 VV1_0836 VV1_0843 VV1_0844 VV1_0845 VV1_0846 VV1_0847 VV1_0848
836 22307757

CRP - UniProtKB: Q7M7I9 regulon and binding site collection of Vibrio vulnificus MO6-24/O


Sites are listed as curated.

AGCGTTATCAATCTCA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

AGCGTTATCAATCTCA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

Site sequence Experimental techniques Gene regulation Curations PMIDs
AGCGTTATCAATCTCA Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details In-vitro transcription (ECO:0001204) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Site directed mutagenesis (ECO:0005667) VVMO6_00860 , VVMO6_00861 , VVMO6_00859 , VVMO6_00858 , VVMO6_00862 , VVMO6_00863 , VVMO6_00864
... ... VVMO6_00860 VVMO6_00861 VVMO6_00859 VVMO6_00858 VVMO6_00862 VVMO6_00863 VVMO6_00864
372 22361942

CRP - UniProtKB: Q7M7I9 regulon and binding site collection of Vibrio vulnificus YJ016


Sites are listed as curated.

CTGAGATGACTGTCCCATTT
GGTGATCAAGATCACA
TGTGACAGTGAGCCAA
TTAAATAAGTTGCTTTTTACGA
TTCGTGTGATCATGTAGTTGTTTT
AGTTGTGCAATAAATGAATTGT
AAATGTTAAACCTGTCACTTCAC
AACTTTGAAACAACTTGCGACAC
TGTGATCGCGAACAGA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GTTTCTGAGATGACTGTCCCATTTAT
CCTTTGGTGATCAAGATCACAGATGT
ATTTTTTGGCTCACTGTCACAAAATC
TTAAATAAGTTGCTTTTTACGACACA
CAAAACAACTACATGATCACACGAAT
GTCCAGTTGTGCAATAAATGAATTGT
GAAAATGTTAAACCTGTCACTTCACC
TCAACTTTGAAACAACTTGCGACACA
GAATTTCTGTTCGCGATCACATTTTG

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

Site sequence Experimental techniques Gene regulation Curations PMIDs
CTGAGATGACTGTCCCATTT Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Primer Extension assay (ECO:0005657) - Experimental technique details Western blot (quantitative) expression analysis (ECO:0000279) VVA1465
... ... VVA1465
877 12947096
GGTGATCAAGATCACA Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Primer Extension assay (ECO:0005657) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) VVA0781 , VVA0782
... ... VVA0781 VVA0782
880 19139193
TGTGACAGTGAGCCAA Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details RNA dot blot (ECO:0001177) VVA0964 , VVA0965 , VVA0963
... ... VVA0964 VVA0965 VVA0963
881 12356775
TTAAATAAGTTGCTTTTTACGA Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Primer Extension assay (ECO:0005657) VVA1644 , VVA1645 , VVA1643 , VVA1642 , VVA1641 , VVA1640
... ... VVA1644 VVA1645 VVA1643 VVA1642 VVA1641 VVA1640
883 16573699
TTCGTGTGATCATGTAGTTGTTTT Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Primer Extension assay (ECO:0005657) VVA1644 , VVA1643 , VVA1642 , VVA1641 , VVA1640
... ... VVA1644 VVA1643 VVA1642 VVA1641 VVA1640
883 16573699
AGTTGTGCAATAAATGAATTGT Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) VV0584 , VV0585 , VV0586 , VV0587 , tolC (VV0583)
... ... VV0584 VV0585 VV0586 VV0587 tolC
884 19028903
AAATGTTAAACCTGTCACTTCAC Experimental technique details EMSA (ECO:0001807) - Experimental technique details In-vitro transcription (ECO:0001204) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Western blot (quantitative) expression analysis (ECO:0000279) VV2808 , VV2810 , VV2809
... ... VV2808 VV2810 VV2809
885 18713737
AACTTTGAAACAACTTGCGACAC Experimental technique details EMSA (ECO:0001807) - Experimental technique details In-vitro transcription (ECO:0001204) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Western blot (quantitative) expression analysis (ECO:0000279) VV2808
... ... VV2808
885 18713737
TGTGATCGCGAACAGA Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) VVA1203 , VVA1204 , VVA1205 , VVA1206 , VVA1202 , VVA1201 , VVA1200 , VVA1199 , VVA1198
... ... VVA1203 VVA1204 VVA1205 VVA1206 VVA1202 VVA1201 VVA1200 VVA1199 VVA1198
905 21956110

All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


Sites are listed as curated.

AGCGTTATCAATCTCA
AGTGCGCCAAATCACAGA
CTGAGATGACTGTCCCATTT
GGTGATCAAGATCACA
TGTGACAGTGAGCCAA
TTAAATAAGTTGCTTTTTACGA
TTCGTGTGATCATGTAGTTGTTTT
AGTTGTGCAATAAATGAATTGT
AAATGTTAAACCTGTCACTTCAC
AACTTTGAAACAACTTGCGACAC
TGTGATCGCGAACAGA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

AAAGCGTTATCAATCTCAATATTCG
AAAGTGCGCCAAATCACAGATAATC
TTTCTGAGATGACTGTCCCATTTAT
CTTTGGTGATCAAGATCACAGATGT
TTTTTTGGCTCACTGTCACAAAATC
GTGTCGTAAAAAGCAACTTATTTAA
TTCGTGTGATCATGTAGTTGTTTTG
TCCAGTTGTGCAATAAATGAATTGT
GTGAAGTGACAGGTTTAACATTTTC
GTGTCGCAAGTTGTTTCAAAGTTGA
AAAATGTGATCGCGAACAGAAATTC
Download data in FASTA format.
Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
Download raw data in TSV format. All reported sites are exported individually.
Download data in Attribute-Relation File Format (ARFF).
Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.