CRP - UniProtKB: Q7M7I9 regulon and binding site collection of Vibrio vulnificus CMCP6


Sites are listed as curated.

AGTGCGCCAAATCACAGA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

AGTGCGCCAAATCACAGA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_004459.3 Q7M7I9 not specified AGTGCGCCAAATCACAGA +[849917:849934] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) VV1_0842 , VV1_0841 , VV1_0840 , VV1_0839 , VV1_0838 , VV1_0837 , VV1_0836 , VV1_0843 , VV1_0844 , VV1_0845 , VV1_0846 , VV1_0847 , VV1_0848
    ... ... VV1_0842 VV1_0841 VV1_0840 VV1_0839 VV1_0838 VV1_0837 VV1_0836 VV1_0843 VV1_0844 VV1_0845 VV1_0846 VV1_0847 VV1_0848
    836 22307757

    CRP - UniProtKB: Q7M7I9 regulon and binding site collection of Vibrio vulnificus MO6-24/O


    Sites are listed as curated.

    AGCGTTATCAATCTCA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    AGCGTTATCAATCTCA

    For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

      Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
      NC_014965.1 Q7M7I9 dimer AGCGTTATCAATCTCA -[957112:957127] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details In-vitro transcription (ECO:0001204) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Site directed mutagenesis (ECO:0005667) VVMO6_00860 , VVMO6_00861 , VVMO6_00859 , VVMO6_00858 , VVMO6_00862 , VVMO6_00863 , VVMO6_00864
      ... ... VVMO6_00860 VVMO6_00861 VVMO6_00859 VVMO6_00858 VVMO6_00862 VVMO6_00863 VVMO6_00864
      372 22361942

      CRP - UniProtKB: Q7M7I9 regulon and binding site collection of Vibrio vulnificus YJ016


      Sites are listed as curated.

      CTGAGATGACTGTCCCATTT
      GGTGATCAAGATCACA
      TGTGACAGTGAGCCAA
      TTAAATAAGTTGCTTTTTACGA
      TTCGTGTGATCATGTAGTTGTTTT
      AGTTGTGCAATAAATGAATTGT
      AAATGTTAAACCTGTCACTTCAC
      AACTTTGAAACAACTTGCGACAC
      TGTGATCGCGAACAGA

      Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

      GTTTCTGAGATGACTGTCCCATTTAT
      CCTTTGGTGATCAAGATCACAGATGT
      ATTTTTTGGCTCACTGTCACAAAATC
      TTAAATAAGTTGCTTTTTACGACACA
      CAAAACAACTACATGATCACACGAAT
      GTCCAGTTGTGCAATAAATGAATTGT
      GAAAATGTTAAACCTGTCACTTCACC
      TCAACTTTGAAACAACTTGCGACACA
      GAATTTCTGTTCGCGATCACATTTTG

      For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

        Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
        NC_005140.1 Q7M7I9 not specified CTGAGATGACTGTCCCATTT -[1611993:1612012] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Primer Extension assay (ECO:0005657) - Experimental technique details Western blot (quantitative) expression analysis (ECO:0000279) VVA1465
        ... ... VVA1465
        877 12947096
        NC_005140.1 Q7M7I9 not specified GGTGATCAAGATCACA -[882892:882907] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Primer Extension assay (ECO:0005657) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) VVA0781 , VVA0782
        ... ... VVA0781 VVA0782
        880 19139193
        NC_005140.1 Q7M7I9 not specified TGTGACAGTGAGCCAA +[1065207:1065222] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details RNA dot blot (ECO:0001177) VVA0964 , VVA0965 , VVA0963
        ... ... VVA0964 VVA0965 VVA0963
        881 12356775
        NC_005140.1 Q7M7I9 not specified TTAAATAAGTTGCTTTTTACGA -[1798030:1798051] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Primer Extension assay (ECO:0005657) VVA1644 , VVA1645 , VVA1643 , VVA1642 , VVA1641 , VVA1640
        ... ... VVA1644 VVA1645 VVA1643 VVA1642 VVA1641 VVA1640
        883 16573699
        NC_005140.1 Q7M7I9 not specified TTCGTGTGATCATGTAGTTGTTTT -[1797988:1798011] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Primer Extension assay (ECO:0005657) VVA1644 , VVA1643 , VVA1642 , VVA1641 , VVA1640
        ... ... VVA1644 VVA1643 VVA1642 VVA1641 VVA1640
        883 16573699
        NC_005139.1 Q7M7I9 not specified AGTTGTGCAATAAATGAATTGT +[568053:568074] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) VV0584 , VV0585 , VV0586 , VV0587 , tolC (VV0583)
        ... ... VV0584 VV0585 VV0586 VV0587 tolC
        884 19028903
        NC_005139.1 Q7M7I9 not specified AAATGTTAAACCTGTCACTTCAC -[2869377:2869399] Experimental technique details EMSA (ECO:0001807) - Experimental technique details In-vitro transcription (ECO:0001204) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Western blot (quantitative) expression analysis (ECO:0000279) VV2808 , VV2810 , VV2809
        ... ... VV2808 VV2810 VV2809
        885 18713737
        NC_005139.1 Q7M7I9 not specified AACTTTGAAACAACTTGCGACAC -[2868962:2868984] Experimental technique details EMSA (ECO:0001807) - Experimental technique details In-vitro transcription (ECO:0001204) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Western blot (quantitative) expression analysis (ECO:0000279) VV2808
        ... ... VV2808
        885 18713737
        NC_005140.1 Q7M7I9 not specified TGTGATCGCGAACAGA +[1323542:1323557] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) VVA1203 , VVA1204 , VVA1205 , VVA1206 , VVA1202 , VVA1201 , VVA1200 , VVA1199 , VVA1198
        ... ... VVA1203 VVA1204 VVA1205 VVA1206 VVA1202 VVA1201 VVA1200 VVA1199 VVA1198
        905 21956110

        All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


        Sites are listed as curated.

        AGCGTTATCAATCTCA
        AGTGCGCCAAATCACAGA
        CTGAGATGACTGTCCCATTT
        GGTGATCAAGATCACA
        TGTGACAGTGAGCCAA
        TTAAATAAGTTGCTTTTTACGA
        TTCGTGTGATCATGTAGTTGTTTT
        AGTTGTGCAATAAATGAATTGT
        AAATGTTAAACCTGTCACTTCAC
        AACTTTGAAACAACTTGCGACAC
        TGTGATCGCGAACAGA

        Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

        AAAGCGTTATCAATCTCAATATTCG
        AAAGTGCGCCAAATCACAGATAATC
        TTTCTGAGATGACTGTCCCATTTAT
        CTTTGGTGATCAAGATCACAGATGT
        TTTTTTGGCTCACTGTCACAAAATC
        GTGTCGTAAAAAGCAACTTATTTAA
        TTCGTGTGATCATGTAGTTGTTTTG
        TCCAGTTGTGCAATAAATGAATTGT
        GTGAAGTGACAGGTTTAACATTTTC
        GTGTCGCAAGTTGTTTCAAAGTTGA
        AAAATGTGATCGCGAACAGAAATTC
        Download data in FASTA format.
        Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
        Download raw data in TSV format. All reported sites are exported individually.
        Download data in Attribute-Relation File Format (ARFF).
        Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
        Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
        Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.