LexA - UniProtKB: P0A7C2 regulon and binding site collection of Escherichia coli


Sites are listed as curated.

GACTGTTTTTTTGTACAGTC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GACTGTTTTTTTGTACAGTC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_007682.3 P0A7C2 dimer GACTGTTTTTTTGTACAGTC +[8356:8375] Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) intI1 (pMUR050_006) , ant3'9 (pMUR050_007) , linF (pMUR050_008)
    ... ... intI1 ant3'9 linF
    665 21529368

    LexA - UniProtKB: P0A7C2 regulon and binding site collection of Escherichia coli str. K-12 substr. MG1655


    Sites are listed as curated.

    TACTGTATATAAAACCAGTT
    TGCTGTATATACTCACAGCA
    TACTGTATATAAAAACAGTA
    GACTGTATAAAACCACAGCC
    CGCTGGATATCTATCCAGCA
    TACTGTACATCCATACAGTA
    TACTGTTTATTTATACAGTA
    TACTGTATATAAAAACAGTA
    AACTGTATATAAATACAGTT
    TACTGTATATAAAACCAGTT
    TACTGTATAAAATCACAGTT
    TGCTGTATATACTCACAGCA
    ACCTGTATAAATAACCAGTA
    TACTGTACGTATCGACAGTT
    TACTGATGATATATACAGGT
    TACTGTATATAAAAACAGTA
    TACTGTATGCTCATACAGTA
    ACCTGAATGAATATACAGTA
    AACTGGACGTTTGTACAGCA
    AACTGTTTTTTTATCCAGTA
    AACTGGATAAAATTACAGGG
    TACTGTATGATTATCCAGTT
    CACTGTATACTTTACCAGTG
    TCCTGTTAATCCATACAGCA
    CACTGGATAGATAACCAGCA
    GACTGTATAAAACCACAGCC
    CGCTGGATATCTATCCAGCA
    TATTGGCTGTTTATACAGTA
    ATCTGTATATATACCCAGCT
    TACTGGATATTTAAACAGGT
    TACTGGATAACACACCATGA
    GCATGTTGAAATAGCCAGTA
    AAATGTTTTTACATCCACTA
    AACTCTATATTACCCCAGTT
    AACTGGACGTTTGTACAGCA
    GACTGTATAAAACCACAGCC
    TACTGTACGTATCGACAGTT
    CACTGTATAAAAATCCTATA
    TACTGTATGATTATCCAGTT
    CACTGTATAAATAAACAGCT
    AACTGATTAAAAACCCAGCG
    TACTGTTTATTTATACAGTA
    AGCTGTATTTGTCTCCAGTA
    TACTGATGATATATACAGGT
    CACTGGATAGATAACCAGCA
    AACTGGATAAAATTACAGGG
    TACTGTATATAAAAACAGTA
    TACTGTATGCTCATACAGTA
    CTGAATAAATATACAG

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    AACTGGTTTTATATACAGTA
    TGCTGTGAGTATATACAGCA
    TACTGTTTTTATATACAGTA
    GGCTGTGGTTTTATACAGTC
    TGCTGGATAGATATCCAGCG
    TACTGTATGGATGTACAGTA
    TACTGTTTATTTATACAGTA
    TACTGTTTTTATATACAGTA
    AACTGTATTTATATACAGTT
    AACTGGTTTTATATACAGTA
    AACTGTGATTTTATACAGTA
    TGCTGTGAGTATATACAGCA
    TACTGGTTATTTATACAGGT
    TACTGTACGTATCGACAGTT
    TACTGATGATATATACAGGT
    TACTGTTTTTATATACAGTA
    TACTGTATGAGCATACAGTA
    TACTGTATATTCATTCAGGT
    AACTGGACGTTTGTACAGCA
    AACTGTTTTTTTATCCAGTA
    CCCTGTAATTTTATCCAGTT
    TACTGTATGATTATCCAGTT
    CACTGGTAAAGTATACAGTG
    TGCTGTATGGATTAACAGGA
    CACTGGATAGATAACCAGCA
    GGCTGTGGTTTTATACAGTC
    TGCTGGATAGATATCCAGCG
    TATTGGCTGTTTATACAGTA
    AGCTGGGTATATATACAGAT
    TACTGGATATTTAAACAGGT
    TCATGGTGTGTTATCCAGTA
    TACTGGCTATTTCAACATGC
    AAATGTTTTTACATCCACTA
    AACTGGGGTAATATAGAGTT
    AACTGGACGTTTGTACAGCA
    GGCTGTGGTTTTATACAGTC
    TACTGTACGTATCGACAGTT
    TATAGGATTTTTATACAGTG
    TACTGTATGATTATCCAGTT
    AGCTGTTTATTTATACAGTG
    CGCTGGGTTTTTAATCAGTT
    TACTGTTTATTTATACAGTA
    AGCTGTATTTGTCTCCAGTA
    TACTGATGATATATACAGGT
    CACTGGATAGATAACCAGCA
    CCCTGTAATTTTATCCAGTT
    TACTGTTTTTATATACAGTA
    TACTGTATGAGCATACAGTA
    AGCTGAATAAATATACAGCA

    For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

      Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
      NC_000913.2 P0A7C2 dimer TACTGTATATAAAACCAGTT +[2749748:2749767] Experimental technique details GST pull-down assay (ECO:0005640) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) nadK (b2615) , recN (b2616)
      ... ... nadK recN
      68 16264194
      NC_000913.2 P0A7C2 dimer TGCTGTATATACTCACAGCA +[4255090:4255109] Experimental technique details GST pull-down assay (ECO:0005640) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) dinF (b4044) , lexA (b4043) , dgkA (b4042)
      ... ... dinF lexA dgkA
      68 16264194
      NC_000913.2 P0A7C2 dimer TACTGTATATAAAAACAGTA +[1229950:1229969] Experimental technique details GST pull-down assay (ECO:0005640) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) umuD (b1183) , hlyE (b1182) , dsbB (b1185) , umuC (b1184)
      ... ... umuD hlyE dsbB umuC
      68 16264194
      NC_000913.2 P0A7C2 dimer GACTGTATAAAACCACAGCC -[65833:65852] Experimental technique details GST pull-down assay (ECO:0005640) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) araD (b0061) , polB (b0060)
      ... ... araD polB
      68 16264194
      NC_000913.2 P0A7C2 dimer CGCTGGATATCTATCCAGCA -[1944049:1944068] Experimental technique details GST pull-down assay (ECO:0005640) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) ruvB (b1860) , yobI (b4677) , ruvA (b1861)
      ... ... ruvB yobI ruvA
      68 16264194
      NC_000913.2 P0A7C2 dimer TACTGTACATCCATACAGTA -[1020164:1020183] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) yccF (b0961) , yccS (b0960) , sxy (b0959) , sulA (b0958)
      ... ... yccF yccS sxy sulA
      69 16264194
      NC_000913.2 P0A7C2 dimer TACTGTTTATTTATACAGTA +[3851321:3851340] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) istR (b4616) , tisB (b4618)
      ... ... istR tisB
      69 16264194
      NC_000913.2 P0A7C2 dimer TACTGTATATAAAAACAGTA +[1229950:1229969] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) dsbB (b1185) , umuC (b1184) , umuD (b1183) , hlyE (b1182)
      ... ... dsbB umuC umuD hlyE
      69 16264194
      NC_000913.2 P0A7C2 dimer AACTGTATATAAATACAGTT +[3815719:3815738] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) dinD (b3645) , yicC (b3644)
      ... ... dinD yicC
      69 16264194
      NC_000913.2 P0A7C2 dimer TACTGTATATAAAACCAGTT +[2749748:2749767] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) recN (b2616) , nadK (b2615)
      ... ... recN nadK
      69 16264194
      NC_000913.2 P0A7C2 dimer TACTGTATAAAATCACAGTT -[1928788:1928807] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) yebG (b1848) , purT (b1849)
      ... ... yebG purT
      69 16264194
      NC_000913.2 P0A7C2 dimer TGCTGTATATACTCACAGCA +[4255090:4255109] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) dinF (b4044) , lexA (b4043) , dgkA (b4042)
      ... ... dinF lexA dgkA
      69 16264194
      NC_000913.2 P0A7C2 dimer ACCTGTATAAATAACCAGTA -[1120729:1120748] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) dinI (b1061) , pyrC (b1062)
      ... ... dinI pyrC
      69 16264194
      NC_000913.2 P0A7C2 dimer TACTGTACGTATCGACAGTT +[1808200:1808219] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) ydjM (b1728) , yniC (b1727)
      ... ... ydjM yniC
      69 16264194
      NC_000913.2 P0A7C2 dimer TACTGATGATATATACAGGT -[4577938:4577957] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) hsdM (b4349) , hsdS (b4348) , symE (b4347) , symR (b4625)
      ... ... hsdM hsdS symE symR
      69 16264194
      NC_000913.2 P0A7C2 dimer TACTGTATATAAAAACAGTA +[1229950:1229969] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) dsbB (b1185) , umuC (b1184) , umuD (b1183) , hlyE (b1182)
      ... ... dsbB umuC umuD hlyE
      69 16264194
      NC_000913.2 P0A7C2 dimer TACTGTATGCTCATACAGTA +[2821850:2821869] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) recA (b2699) , ygaD (b2700)
      ... ... recA ygaD
      69 16264194
      NC_000913.2 P0A7C2 dimer ACCTGAATGAATATACAGTA +[4271977:4271996] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) ssb (b4059) , yjbQ (b4056) , yjbR (b4057) , uvrA (b4058)
      ... ... ssb yjbQ yjbR uvrA
      69 16264194
      NC_000913.2 P0A7C2 dimer AACTGGACGTTTGTACAGCA +[4015292:4015311] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) udp (b3831) , rmuC (b3832)
      ... ... udp rmuC
      69 16264194
      NC_000913.2 P0A7C2 dimer AACTGTTTTTTTATCCAGTA +[812654:812673] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) bioB (b0775) , bioF (b0776) , bioC (b0777) , bioD (b0778) , uvrB (b0779)
      ... ... bioB bioF bioC bioD uvrB
      69 16264194
      NC_000913.2 P0A7C2 dimer AACTGGATAAAATTACAGGG +[2194468:2194487] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) yehI (b2118) , yehH (b4499) , metG (b2114)
      ... ... yehI yehH metG
      69 16264194
      NC_000913.2 P0A7C2 dimer TACTGTATGATTATCCAGTT -[3646002:3646021] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) arsR (b3501) , dinQ (b4613)
      ... ... arsR dinQ
      69 16264194
      NC_000913.2 P0A7C2 dimer CACTGTATACTTTACCAGTG +[250863:250882] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) dinB (b0231) , lfhA (b0229) , lafU (b0230)
      ... ... dinB lfhA lafU
      69 16264194
      NC_000913.2 P0A7C2 dimer TCCTGTTAATCCATACAGCA +[932350:932369] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) lrp (b0889) , ftsK (b0890)
      ... ... lrp ftsK
      69 16264194
      NC_000913.2 P0A7C2 dimer CACTGGATAGATAACCAGCA +[1821505:1821524] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) ves (b1742) , cho (b1741) , nadE (b1740)
      ... ... ves cho nadE
      69 16264194
      NC_000913.2 P0A7C2 dimer GACTGTATAAAACCACAGCC -[65833:65852] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) araD (b0061) , polB (b0060)
      ... ... araD polB
      69 16264194
      NC_000913.2 P0A7C2 dimer CGCTGGATATCTATCCAGCA -[1944049:1944068] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) yobI (b4677) , ruvB (b1860) , ruvA (b1861)
      ... ... yobI ruvB ruvA
      69 16264194
      NC_000913.2 P0A7C2 dimer TATTGGCTGTTTATACAGTA +[832258:832277] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) dinG (b0799) , ybiA (b0798) , ybiB (b0800)
      ... ... dinG ybiA ybiB
      69 16264194
      NC_000913.2 P0A7C2 dimer ATCTGTATATATACCCAGCT +[3995929:3995948] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) yifL (b4558) , uvrD (b3813) , dapF (b3809) , yigA (b3810) , xerC (b3811) , yigB (b3812)
      ... ... yifL uvrD dapF yigA xerC yigB
      69 16264194
      NC_000913.2 P0A7C2 dimer TACTGGATATTTAAACAGGT -[1225560:1225579] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) ycgJ (b1177) , minE (b1174) , minD (b1175) , minC (b1176)
      ... ... ycgJ minE minD minC
      69 16264194
      NC_000913.2 P0A7C2 dimer TACTGGATAACACACCATGA +[1892003:1892022] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) yoaC (b1810) , yoaB (b1809)
      ... ... yoaC yoaB
      69 16264194
      NC_000913.2 P0A7C2 dimer GCATGTTGAAATAGCCAGTA -[3958234:3958253] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) gpp (b3779) , rep (b3778) , ppiC (b3775) , yifN (b3777)
      ... ... gpp rep ppiC yifN
      69 16264194
      NC_000913.2 P0A7C2 dimer AAATGTTTTTACATCCACTA -[243356:243375] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) lpcA (b0222) , ivy (b0220) , fadE (b0221)
      ... ... lpcA ivy fadE
      69 16264194
      NC_000913.2 P0A7C2 dimer AACTCTATATTACCCCAGTT -[1585353:1585372] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) ydeR (b1503) , ydeS (b1504) , ydeP (b1501) , ydeQ (b1502) , ydeT (b1505)
      ... ... ydeR ydeS ydeP ydeQ ydeT
      69 16264194
      NC_000913.2 P0A7C2 dimer AACTGGACGTTTGTACAGCA +[4015292:4015311] Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) rmuC (b3832) , udp (b3831)
      ... ... rmuC udp
      288 10760155
      NC_000913.2 P0A7C2 dimer GACTGTATAAAACCACAGCC -[65833:65852] Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) polB (b0060) , araD (b0061)
      ... ... polB araD
      288 10760155
      NC_000913.2 P0A7C2 dimer TACTGTACGTATCGACAGTT +[1808200:1808219] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Hydroxyl-radical footprinting (ECO:0005643) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details PSSM site search (ECO:0005659) ydjM (b1728) , yniC (b1727)
      ... ... ydjM yniC
      287 10760155
      NC_000913.2 P0A7C2 dimer CACTGTATAAAAATCCTATA +[1808182:1808201] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Hydroxyl-radical footprinting (ECO:0005643) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details PSSM site search (ECO:0005659) ydjM (b1728) , yniC (b1727)
      ... ... ydjM yniC
      287 10760155
      NC_000913.2 P0A7C2 dimer TACTGTATGATTATCCAGTT -[3646002:3646021] Experimental technique details Northern blot (ECO:0005653) - Experimental technique details PSSM site search (ECO:0005659) dinQ (b4613) , arsR (b3501)
      ... ... dinQ arsR
      286 10760155
      NC_000913.2 P0A7C2 dimer CACTGTATAAATAAACAGCT +[606862:606881] Experimental technique details Northern blot (ECO:0005653) - Experimental technique details PSSM site search (ECO:0005659) hokE (b4415) , ybdK (b0581) , sokE (b4700)
      ... ... hokE ybdK sokE
      286 10760155
      NC_000913.2 P0A7C2 dimer AACTGATTAAAAACCCAGCG -[711237:711256] Experimental technique details Northern blot (ECO:0005653) - Experimental technique details PSSM site search (ECO:0005659) ybfE (b0685) , ybfF (b0686)
      ... ... ybfE ybfF
      286 10760155
      NC_000913.2 P0A7C2 dimer TACTGTTTATTTATACAGTA +[3851321:3851340] Experimental technique details Northern blot (ECO:0005653) - Experimental technique details PSSM site search (ECO:0005659) tisB (b4618) , istR (b4616)
      ... ... tisB istR
      286 10760155
      NC_000913.2 P0A7C2 dimer AGCTGTATTTGTCTCCAGTA +[3719632:3719651] Experimental technique details Northern blot (ECO:0005653) - Experimental technique details PSSM site search (ECO:0005659) insK (b3558) , insJ (b3557) , sokA (b4614)
      ... ... insK insJ sokA
      286 10760155
      NC_000913.2 P0A7C2 dimer TACTGATGATATATACAGGT -[4577938:4577957] Experimental technique details Northern blot (ECO:0005653) - Experimental technique details PSSM site search (ECO:0005659) symE (b4347) , symR (b4625) , hsdS (b4348) , hsdM (b4349)
      ... ... symE symR hsdS hsdM
      286 10760155
      NC_000913.2 P0A7C2 dimer CACTGGATAGATAACCAGCA +[1821505:1821524] Experimental technique details Northern blot (ECO:0005653) - Experimental technique details PSSM site search (ECO:0005659) cho (b1741) , nadE (b1740) , ves (b1742)
      ... ... cho nadE ves
      286 10760155
      NC_000913.2 P0A7C2 dimer AACTGGATAAAATTACAGGG +[2194468:2194487] Experimental technique details Northern blot (ECO:0005653) - Experimental technique details PSSM site search (ECO:0005659) yehH (b4499) , metG (b2114) , yehI (b2118)
      ... ... yehH metG yehI
      286 10760155
      NC_000913.2 P0A7C2 dimer TACTGTATATAAAAACAGTA +[1229950:1229969] Experimental technique details Northern blot (ECO:0005653) - Experimental technique details PSSM site search (ECO:0005659) umuD (b1183) , umuC (b1184) , hlyE (b1182) , dsbB (b1185)
      ... ... umuD umuC hlyE dsbB
      286 10760155
      NC_000913.2 P0A7C2 dimer TACTGTATGCTCATACAGTA +[2821850:2821869] Experimental technique details Northern blot (ECO:0005653) - Experimental technique details PSSM site search (ECO:0005659) recA (b2699) , ygaD (b2700)
      ... ... recA ygaD
      286 10760155
      NC_000913.2 P0A7C2 dimer CTGAATAAATATACAG -[246518:246533] Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) yafQ (b0225) , dinJ (b0226) , yafL (b0227)
      ... ... yafQ dinJ yafL
      1034 19210620

      All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


      Sites are listed as curated.

      TACTGTATATAAAACCAGTT
      TGCTGTATATACTCACAGCA
      TACTGTATATAAAAACAGTA
      GACTGTATAAAACCACAGCC
      CGCTGGATATCTATCCAGCA
      TACTGTACATCCATACAGTA
      TACTGTTTATTTATACAGTA
      TACTGTATATAAAAACAGTA
      AACTGTATATAAATACAGTT
      TACTGTATATAAAACCAGTT
      TACTGTATAAAATCACAGTT
      TGCTGTATATACTCACAGCA
      ACCTGTATAAATAACCAGTA
      TACTGTACGTATCGACAGTT
      TACTGATGATATATACAGGT
      TACTGTATATAAAAACAGTA
      TACTGTATGCTCATACAGTA
      ACCTGAATGAATATACAGTA
      AACTGGACGTTTGTACAGCA
      AACTGTTTTTTTATCCAGTA
      AACTGGATAAAATTACAGGG
      TACTGTATGATTATCCAGTT
      CACTGTATACTTTACCAGTG
      TCCTGTTAATCCATACAGCA
      CACTGGATAGATAACCAGCA
      GACTGTATAAAACCACAGCC
      CGCTGGATATCTATCCAGCA
      TATTGGCTGTTTATACAGTA
      ATCTGTATATATACCCAGCT
      TACTGGATATTTAAACAGGT
      TACTGGATAACACACCATGA
      GCATGTTGAAATAGCCAGTA
      AAATGTTTTTACATCCACTA
      AACTCTATATTACCCCAGTT
      AACTGGACGTTTGTACAGCA
      GACTGTATAAAACCACAGCC
      TACTGTACGTATCGACAGTT
      CACTGTATAAAAATCCTATA
      TACTGTATGATTATCCAGTT
      CACTGTATAAATAAACAGCT
      AACTGATTAAAAACCCAGCG
      TACTGTTTATTTATACAGTA
      AGCTGTATTTGTCTCCAGTA
      TACTGATGATATATACAGGT
      CACTGGATAGATAACCAGCA
      AACTGGATAAAATTACAGGG
      TACTGTATATAAAAACAGTA
      TACTGTATGCTCATACAGTA
      GACTGTTTTTTTGTACAGTC
      CTGAATAAATATACAG

      Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

      AACTGGTTTTATATACAGTA
      TGCTGTATATACTCACAGCA
      TACTGTTTTTATATACAGTA
      GACTGTATAAAACCACAGCC
      TGCTGGATAGATATCCAGCG
      TACTGTATGGATGTACAGTA
      TACTGTTTATTTATACAGTA
      TACTGTTTTTATATACAGTA
      AACTGTATTTATATACAGTT
      AACTGGTTTTATATACAGTA
      TACTGTATAAAATCACAGTT
      TGCTGTATATACTCACAGCA
      TACTGGTTATTTATACAGGT
      AACTGTCGATACGTACAGTA
      TACTGATGATATATACAGGT
      TACTGTTTTTATATACAGTA
      TACTGTATGAGCATACAGTA
      ACCTGAATGAATATACAGTA
      TGCTGTACAAACGTCCAGTT
      AACTGTTTTTTTATCCAGTA
      AACTGGATAAAATTACAGGG
      AACTGGATAATCATACAGTA
      CACTGGTAAAGTATACAGTG
      TCCTGTTAATCCATACAGCA
      TGCTGGTTATCTATCCAGTG
      GACTGTATAAAACCACAGCC
      TGCTGGATAGATATCCAGCG
      TACTGTATAAACAGCCAATA
      ATCTGTATATATACCCAGCT
      ACCTGTTTAAATATCCAGTA
      TCATGGTGTGTTATCCAGTA
      GCATGTTGAAATAGCCAGTA
      AAATGTTTTTACATCCACTA
      AACTCTATATTACCCCAGTT
      TGCTGTACAAACGTCCAGTT
      GACTGTATAAAACCACAGCC
      AACTGTCGATACGTACAGTA
      CACTGTATAAAAATCCTATA
      TACTGTATGATTATCCAGTT
      AGCTGTTTATTTATACAGTG
      AACTGATTAAAAACCCAGCG
      TACTGTTTATTTATACAGTA
      AGCTGTATTTGTCTCCAGTA
      TACTGATGATATATACAGGT
      TGCTGGTTATCTATCCAGTG
      AACTGGATAAAATTACAGGG
      TACTGTTTTTATATACAGTA
      TACTGTATGAGCATACAGTA
      GACTGTTTTTTTGTACAGTC
      AGCTGAATAAATATACAGCA
      Download data in FASTA format.
      Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
      Download raw data in TSV format. All reported sites are exported individually.
      Download data in Attribute-Relation File Format (ARFF).
      Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
      Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
      Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.